Yang, Z., Zhang, G., Zhao, R., Tian, T., Zhi, J., Wei, G., Roeder, R. G., Jing, L., and Yu, M. (2024) MLL-AF9 regulates transcriptional initiation in mixed lineage leukemic cells, J Biol Chem 300, 107566.

Wang, T., Zhao, R., Zhi, J., Liu, Z., Wu, A., Yang, Z., Wang, W., Ni, T., Jing, L., and Yu, M. (2023) Tox4 regulates transcriptional elongation and reinitiation during murine T cell development, Communications Biology 6, 613. doi: 10.1038/ s42003-023-04992-y.

Liu, Z., Wu, A., Wu, Z., Wang, T., Pan, Y., Li, B., Zhang, X., and Yu, M. (2022) TOX4 facilitates promoter-proximal pausing and C-terminal domain dephosphorylation of RNA polymerase II in human cells. Commun Biol. Apr 1;5(1):300. doi: 10.1038/s42003-022-03214-1.

Wu, A., Zhi, J., Tian, T., Cihan, A., Cevher, M., Liu, Z., David, Y., Muir, T.W., Roeder, R.G., and Yu, M. (2021) DOT1L complex regulates transcriptional initiation in human erythroleukemic cells. Proc Natl Acad Sci U S A 118(27) e2106148118.

Pei, T. T., Li, H., Liang, X., Wang, Z. H., Liu, G., Wu, L. L., Kim, H., Xie, Z., Yu, M., Lin, S., Xu, P., and Dong, T. G. (2020) Intramolecular chaperone-mediated secretion of an Rhs effector toxin by a type VI secretion system, Nat Commun 11, 1865.

Yu, M., Yang, W., Ni, T., Tang, Z., Nakadai, T., Zhu, J., and Roeder, R.G. (2015) RNA polymerase II-associated factor 1 regulates the release and phosphorylation of paused RNA polymerase II. Science 350, 1383-1386. 

Wang, E., Kawaoka, S., Yu, M., Shi, J., Ni, T., Yang, W., Zhu, J., Roeder, R. G., and Vakoc, C. R. (2013) Histone H2B ubiquitin ligase RNF20 is required for MLL-rearranged leukemia, Proc Natl Acad Sci U S A 110, 3901-3906. 

Yu, M., Mazor, T., Huang, H., Huang, H. T., Kathrein, K. L., Woo, A. J., Chouinard, C. R., Labadorf, A., Akie, T. E., Moran, T. B., Xie, H., Zacharek, S., Taniuchi, I., Roeder, R. G., Kim, C. F., Zon, L. I., Fraenkel, E., and Cantor, A. B. (2012) Direct recruitment of polycomb repressive complex 1 to chromatin by core binding transcription factors, Mol Cell 45, 330-343. 

Amigo, J. D., Yu, M., Troadec, M. B., Gwynn, B., Cooney, J. D., Lambert, A. J., Chi, N. C., Weiss, M. J., Peters, L. L., Kaplan, J., Cantor, A. B., and Paw, B. H. (2011) Identification of Distal cis-Regulatory Elements at Mouse Mitoferrin Loci Using Zebrafish Transgenesis, Mol Cell Biol 31, 1344-1356. 

Yu, M., Riva, L., Xie, H., Schindler, Y., Moran, T. B., Cheng, Y., Yu, D., Hardison, R., Weiss, M. J., Orkin, S. H., Bernstein, B. E., Fraenkel, E., and Cantor, A. B. (2009) Insights into GATA-1-Mediated Gene Activation versus Repression via Genome-wide Chromatin Occupancy Analysis, Mol Cell 36, 682-695.